visualizador_instanciados/backend/app/README.md

Backend App (backend/app)

This folder contains the FastAPI backend for visualizador_instanciados.

The backend executes SPARQL queries against an AnzoGraph SPARQL endpoint over HTTP (optionally LOAD a TTL on startup).

Files

• main.py
  • FastAPI app setup, startup/shutdown (lifespan), and HTTP endpoints.
• settings.py
  • Env-driven configuration (pydantic-settings).
• sparql_engine.py
  • SPARQL execution layer:
    • AnzoGraphEngine: HTTP POST to /sparql with Basic auth + readiness gate.
  • create_sparql_engine(settings) creates the engine.
• graph_export.py
  • Shared helpers to:
    • build the snapshot SPARQL query used for edge retrieval
    • map SPARQL JSON bindings to {nodes, edges}.
• models.py
  • Pydantic response/request models:
    • Node, Edge, GraphResponse, StatsResponse, etc.
• pipelines/graph_snapshot.py
  • Pipeline used by /api/graph to return a {nodes, edges} snapshot via SPARQL.
• pipelines/layout_dag_radial.py
  • DAG layout helpers used by pipelines/graph_snapshot.py:
    • cycle detection
    • level-synchronous Kahn layering
    • radial (ring-per-layer) positioning.
• pipelines/snapshot_service.py
  • Snapshot cache layer used by /api/graph and /api/stats so the backend doesn't run expensive SPARQL twice.
• pipelines/subclass_labels.py
  • Pipeline to extract rdfs:subClassOf entities and aligned rdfs:label list.

Runtime Flow

On startup (FastAPI lifespan):

1. create_sparql_engine(settings) selects and starts a SPARQL engine.
2. The engine is stored at app.state.sparql.

On shutdown:

• app.state.sparql.shutdown() is called to close the HTTP client.

Environment Variables

Most configuration is intended to be provided via container environment variables (see repo root .env and docker-compose.yml).

Core:

• INCLUDE_BNODES: true/false
• CORS_ORIGINS: comma-separated list or *

Optional import-combining step (separate container):

The repo's owl_imports_combiner Docker service can be used to recursively load a Turtle file (or URL) plus its owl:imports into a single combined TTL output.

• COMBINE_OWL_IMPORTS_ON_START: true to run the combiner container on startup (no-op when false)
• COMBINE_ENTRY_LOCATION: entry file/URL to load (falls back to TTL_PATH if not set)
• COMBINE_OUTPUT_LOCATION: output path for the combined TTL (defaults to ${dirname(entry)}/${COMBINE_OUTPUT_NAME})
• COMBINE_OUTPUT_NAME: output filename when COMBINE_OUTPUT_LOCATION is not set (default: combined_ontology.ttl)
• COMBINE_FORCE: true to rebuild even if the output file already exists

AnzoGraph mode:

• SPARQL_HOST: base host (example: http://anzograph:8080)
• SPARQL_ENDPOINT: optional full endpoint; if set, overrides ${SPARQL_HOST}/sparql
• SPARQL_USER, SPARQL_PASS: Basic auth credentials
• SPARQL_DATA_FILE: file URI as seen by the AnzoGraph container (example: file:///opt/shared-files/o3po.ttl)
• SPARQL_GRAPH_IRI: optional graph IRI for LOAD ... INTO GRAPH <...>
• SPARQL_LOAD_ON_START: true to execute LOAD <SPARQL_DATA_FILE> during startup
• SPARQL_CLEAR_ON_START: true to execute CLEAR ALL during startup (dangerous)
• SPARQL_TIMEOUT_S: request timeout for normal SPARQL requests
• SPARQL_READY_RETRIES, SPARQL_READY_DELAY_S, SPARQL_READY_TIMEOUT_S: readiness gate parameters

AnzoGraph Readiness Gate

AnzoGraphEngine does not assume "container started" means "SPARQL works". It waits for a smoke-test POST:

• Method: POST ${SPARQL_ENDPOINT}
• Headers:
  • Content-Type: application/x-www-form-urlencoded
  • Accept: application/sparql-results+json
  • Authorization: Basic ... (if configured)
• Body: query=ASK WHERE { ?s ?p ?o }
• Success condition: HTTP 2xx and response parses as JSON

This matches the behavior described in docs/anzograph-readiness-julia.md.

API Endpoints

• GET /api/health
  • Returns { "status": "ok" }.
• GET /api/stats
  • Returns counts for the same snapshot used by /api/graph (via the snapshot cache).
• POST /api/sparql
  • Body: { "query": "<SPARQL SELECT/ASK>" }
  • Returns SPARQL JSON results as-is.
  • Notes:
    • This endpoint is intended for SELECT/ASK returning SPARQL-JSON.
    • SPARQL UPDATE is not exposed here (AnzoGraph LOAD/CLEAR are handled internally during startup).
• GET /api/graph?node_limit=...&edge_limit=...
  • Returns a graph snapshot as { nodes: [...], edges: [...] }.
  • Implemented as a SPARQL edge query + mapping in pipelines/graph_snapshot.py.

Data Contract

Node

Returned in nodes[] (dense IDs; suitable for indexing in typed arrays):

{
  "id": 0,
  "termType": "uri",
  "iri": "http://example.org/Thing",
  "label": null,
  "x": 0.0,
  "y": 0.0
}

• id: integer dense node ID used in edges
• termType: "uri" or "bnode"
• iri: URI string; blank nodes are normalized to _:<id>
• label: rdfs:label when available (best-effort; prefers English)
• x/y: world-space coordinates for rendering (currently a radial layered layout derived from rdfs:subClassOf)

Edge

Returned in edges[]:

{
  "source": 0,
  "target": 12,
  "predicate": "http://www.w3.org/2000/01/rdf-schema#subClassOf"
}

• source/target: dense node IDs (indexes into nodes[])
• predicate: predicate IRI string

Snapshot Query (/api/graph)

/api/graph currently uses a SPARQL query that returns only rdfs:subClassOf edges:

• selects bindings as ?s ?p ?o (with ?p bound to rdfs:subClassOf)
• excludes literal objects (FILTER(!isLiteral(?o))) for safety
• optionally excludes blank nodes (unless INCLUDE_BNODES=true)
• applies LIMIT edge_limit

The result bindings are mapped to dense node IDs (first-seen order) and returned to the caller.

/api/graph also returns meta with snapshot counts and engine info so the frontend doesn't need to call /api/stats.

If a cycle is detected in the returned rdfs:subClassOf snapshot, /api/graph returns HTTP 422 (layout requires a DAG).

Pipelines

pipelines/graph_snapshot.py

fetch_graph_snapshot(...) is the main "export graph" pipeline used by /api/graph.

pipelines/subclass_labels.py

extract_subclass_entities_and_labels(...):

1. Queries all rdfs:subClassOf triples.
2. Builds a unique set of subjects+objects, then converts it to a deterministic list.
3. Queries rdfs:label for those entities and returns aligned lists:
   • entities[i] corresponds to labels[i].

Notes / Tradeoffs

• /api/graph returns only nodes that appear in the returned edge result set. Nodes not referenced by those edges will not be present.
• AnzoGraph SPARQL feature support (inference, extensions, performance) is vendor-specific.